Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_P03
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak k... 31 1.3
U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak k... 31 1.3
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 3.0
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 29 3.0
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 29 4.0
L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 29 5.3
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 29 5.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 9.3
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 9.3
>U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform b protein.
Length = 422
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
G +++ F H S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329
>U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform a protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
G +++ F H S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 807 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 867 YLEPEPERRSHS 878
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 805 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 865 YLEPEPERRSHS 876
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
F L F++TG E KS V + S+ +I GYR+
Sbjct: 37 FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 805 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 865 YLEPEPERRSHS 876
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 583 EFHTPTTPDLTSISINPLNAVLKXVRA 663
+F TP TP L+ +I L+ VLK +RA
Sbjct: 1016 DFFTPDTPRLSPSAIQDLDKVLKKIRA 1042
>L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein
1.2, isoform b protein.
Length = 381
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 516 RPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSP 635
RP +SSHP S +S+ S+N + L+ H HQ P
Sbjct: 195 RPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSAHQHQKP 234
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 516 RPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSP 635
RP +SSHP S +S+ S+N + L+ H HQ P
Sbjct: 369 RPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSAHQHQKP 408
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +2
Query: 533 PPSPGDLGYINPIIKSPNSIHQPPQT*HP-----FPSIP*TPY*XEFAPGLKPPLSSXAP 697
PP P Y+ + + PP +P P+ P PY P PPL+S
Sbjct: 30 PPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQ 89
Query: 698 SAYLTPS 718
+A P+
Sbjct: 90 NAVPVPA 96
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -2
Query: 741 TPLTMPSDEGVR--YADGA-SDDNGGFNPGANSF*YGVQGIDGNGC*V-WGGWCMEFGDL 574
+P P + GV YA A S GG +PGA G DG GGW
Sbjct: 1498 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAG--NTDGGASPFNEGGWSPASPGD 1555
Query: 573 MIGLM*PRSPGEGGL 529
+G + PR+P GG+
Sbjct: 1556 PLGALSPRTPSYGGM 1570
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -2
Query: 741 TPLTMPSDEGVR--YADGA-SDDNGGFNPGANSF*YGVQGIDGNGC*V-WGGWCMEFGDL 574
+P P + GV YA A S GG +PGA G DG GGW
Sbjct: 1505 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAG--NTDGGASPFNEGGWSPASPGD 1562
Query: 573 MIGLM*PRSPGEGGL 529
+G + PR+P GG+
Sbjct: 1563 PLGALSPRTPSYGGM 1577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,903
Number of Sequences: 27780
Number of extensions: 371918
Number of successful extensions: 1124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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