Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_O19
(846 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.031
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 30 0.031
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 29 0.054
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.16
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.22
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.22
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.50
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.50
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.50
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.50
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.50
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.66
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.66
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 3.5
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 22 8.2
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 96 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 260
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 261 MNWIDKRLSWNA 296
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 102 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 269
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 270 IDKRLSWNAG 299
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.9 bits (64), Expect = 0.031
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGXXSW 438
V S+ +WRPD+VL NA A +A + + G W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 29.9 bits (64), Expect = 0.031
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
+ RLW+PDV++ N+A G Y V NNG
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNG 134
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 29.1 bits (62), Expect = 0.054
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGXXSW 438
V S+ +WRPD+VL NA A +A ++ G W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 123 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 281
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 282 LSWN 293
L +N
Sbjct: 95 LRFN 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAA 375
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.16
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V++NG
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.16
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V++NG
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA 375
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.5 bits (58), Expect = 0.16
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGXXSW 438
G V SE +W PD+VL N A G+Y + +A + G SW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V++NG
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNG 97
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 301 EWGCSTWL-VSSERLWRPDVVLLNAA 375
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V+++G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V+++G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V+++G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V+++G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.50
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNG 426
++ +LW+PD+++ N+A G Y V+++G
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.4 bits (53), Expect = 0.66
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGXXSW 438
+++W+PD+VL N A G+Y +R + + NG W
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 308
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.66
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGXXSW 438
V R+WRPD +L N A + VS+ G W
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 743 PXXXXXXAPXXPRXXPPXXGPPXXAPPT 826
P +P P PP GPP APP+
Sbjct: 31 PQAPQRGSPPNPSQGPPPGGPP-GAPPS 57
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.0 bits (47), Expect = 3.5
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYAL---RARVSNNGXXSWXKRLDI 456
ER+WRPD N + + R+S +G + RL I
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTI 158
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 21.8 bits (44), Expect = 8.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 429 PLLDXALGHYHSN 467
P+++ LGH+H N
Sbjct: 165 PMVNYTLGHHHQN 177
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,985
Number of Sequences: 438
Number of extensions: 3881
Number of successful extensions: 36
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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