Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_O06
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = -1

Query: 693 PPPPXXXXXXXXXXXXXXXXXXXPPPPPPPPXXXGGGGXK 574
           PPP                    PPPPPPPP     GG +
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 624 PPPPPPPPXXXGGGG 580
           PPPPPPPP     GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 624 PPPPPPPPXXXGGGGXK 574
           PPPPPPPP      G K
Sbjct: 945 PPPPPPPPPLVSAAGGK 961


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -3

Query: 694 PPPPPXXXXXXXXXXXXXXXXXXXPPPPPPPXXXGGGR 581
           PPPPP                   PPPPPP      GR
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -2

Query: 692 PPPPXXXXXXXXXXXXXXXXXXXPPPPPPPXXXGGG 585
           PPPP                   PPPPPPP     G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -1

Query: 693 PPPPXXXXXXXXXXXXXXXXXXXPPPPPPPPXXXGGG 583
           PPPP                    PPPPPPP     G
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 690 PPPXXXXXXXXXXXXXXXXXXXPPPPPPPP 601
           PPP                   PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -1

Query: 693 PPPPXXXXXXXXXXXXXXXXXXXPPPPPPPP 601
           PPP                    PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 624 PPPPPPPP 601
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 624 PPPPPPPP 601
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 624 PPPPPPPP 601
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 624  PPPPPPPP 601
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 624 PPPPPPPP 601
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,127
Number of Sequences: 5004
Number of extensions: 18990
Number of successful extensions: 260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)