Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_O04
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.57 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.0  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.0  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   4.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 240 VRVHRADTGRSSNELDRQTTELEXRGMGL 326
           +R H+   GR+  ELDR+ T+L+ R   L
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL 46


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 318 FPXVPIQSFVDPIHLKICQYPHGGL 244
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 66
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +3

Query: 105 GRMRKRNITVPHDRLAPRNVRSGVSPRLQNRSQPXPAFETC*HS*VRVHRADTGRSSNEL 284
           G+++   + V H   A R V SG+         P  A ++  H+  R H   T  ++N L
Sbjct: 228 GKLKDIKLAVKHYLAAIRLVNSGIP------DSPSEAIKSI-HNNPR-HAPTTKETANSL 279

Query: 285 DRQTTELEXRGMGLHTWLGSPEPCGXLTWY 374
                 L    M LH  LG P+P     W+
Sbjct: 280 SIAAFRLGC--MALHGELGKPDPSLAYAWF 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,310
Number of Sequences: 5004
Number of extensions: 42596
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)