Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_N11
(825 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 55 9e-10
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 54 2e-09
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 54 2e-09
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 54 2e-09
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 53 3e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 53 3e-09
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 53 3e-09
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 53 4e-09
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 52 5e-09
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 52 9e-09
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 51 1e-08
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 51 1e-08
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 51 1e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 51 1e-08
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 50 2e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 48 1e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 48 1e-07
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 42 5e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 37 2e-04
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 34 0.001
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 32 0.006
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 31 0.013
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.013
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 31 0.013
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.5
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 54.8 bits (126), Expect = 9e-10
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 354
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 355 PDVVLLSAAATTGGXYALRAR----VSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXX 522
PD+VL + A G Y +R + + NG V W+ + ++ + + D QTC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 523 KFGS 534
KFGS
Sbjct: 168 KFGS 171
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 54.0 bits (124), Expect = 2e-09
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V++NGS ++ + + + + D Q C KFGS
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 199
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 54.0 bits (124), Expect = 2e-09
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V++NGS ++ + + + + D Q C KFGS
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 199
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 53.6 bits (123), Expect = 2e-09
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V++NGS ++ + + + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 53.2 bits (122), Expect = 3e-09
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 354
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 355 PDVVLLSAA-ATTGGXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFG 531
PD+VL + A A +A + + G V W + + ++ + D QTC KFG
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
Query: 532 S 534
S
Sbjct: 173 S 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 53.2 bits (122), Expect = 3e-09
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +1
Query: 262 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLSAA-ATTGGXYALRARVSNNGS 435
++ +W D +L W+ E+G L V S+ +WRPD+VL + A A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 436 VSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
V W + + ++ + D QTC KFGS
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 53.2 bits (122), Expect = 3e-09
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 184 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 351
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 352 RPDVVLLSAAATTGGXYAL-RARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKF 528
PD+VL + A G + +A + G V W + + + + D QTC KF
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
Query: 529 GS 534
GS
Sbjct: 164 GS 165
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 52.8 bits (121), Expect = 4e-09
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V+++GS ++ + M + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGS 131
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 52.4 bits (120), Expect = 5e-09
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V+++GS ++ + M + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGS 131
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 51.6 bits (118), Expect = 9e-09
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V+++GS ++ + + + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 51.2 bits (117), Expect = 1e-08
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V+++GS ++ + + + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGS 131
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 51.2 bits (117), Expect = 1e-08
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-SAAATTG 393
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ SA
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G Y V+++GS ++ + + + + D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGS 131
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 50.8 bits (116), Expect = 1e-08
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 354
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 355 PDVVLLSAAATTGGXYAL----RARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXX 522
PD+VL + A G Y + +A V +G V W + S+ ++ + D+QTC
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVL 169
Query: 523 KFGS 534
K GS
Sbjct: 170 KLGS 173
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 50.8 bits (116), Expect = 1e-08
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 262 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLSAAATTGGXYAL----RARVSN 426
++ W D +L WN E+G L V SE +W PD+VL + A G Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 427 NGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
G VSW + + ++ + D Q+C KFGS
Sbjct: 143 TGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGS 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 50.4 bits (115), Expect = 2e-08
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Frame = +1
Query: 148 QRTIGTPPPYSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTW 327
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 328 L-VSSERLWRPDVVLL-SAAATTGGXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXR 501
L + RLW+PDV++ SA G Y V NNG+ ++ + + + +
Sbjct: 98 LRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPF 157
Query: 502 DMQTCXXKFGS 534
D Q C KFGS
Sbjct: 158 DDQRCEMKFGS 168
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 49.2 bits (112), Expect = 5e-08
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Frame = +1
Query: 151 RTIGTPPPYSKIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG-CST 324
R +G + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 325 WLVSSERLWRPDVVLLSAAATTGGXYAL----RARVSNNGSVSWIKRLDISTPISMQLDN 492
V SE +W PD+VL + A G Y + +A + + G V W + + ++
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEY 151
Query: 493 WXRDMQTCXXKFGS 534
+ D QTC KFGS
Sbjct: 152 FPFDEQTCFMKFGS 165
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 48.0 bits (109), Expect = 1e-07
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +1
Query: 223 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLSAAAT---TG 393
I E + T + + +W+D+RL++ G+ + + R+W+PD + + T
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 394 GXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
R+ +G V + RL I M L+N+ D Q C +FGS
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 47.6 bits (108), Expect = 1e-07
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +1
Query: 184 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 360
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 361 VVLLSAAATTGGXYALRAR--VSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
+L + A + VS+ G V W+ + + ++ + D Q C K+ S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 43.6 bits (98), Expect = 2e-06
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTLHL--RHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 351
+I N+T+ L + + S + + + + + W D LSW ++ G + V S+ +W
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125
Query: 352 RPDVVLLSAAATT---GGXYALRARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXX 522
PD+ + ++ T G V ++GSVS + + + +W D C
Sbjct: 126 VPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRI 185
Query: 523 KFGS 534
FGS
Sbjct: 186 NFGS 189
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 42.3 bits (95), Expect = 5e-06
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = +1
Query: 223 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLSAAATTGGXY 402
+ E + + + +W D RLS+ S + ER+WRPD + +
Sbjct: 76 VSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTI 135
Query: 403 ALR---ARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
+ R+S +G + + RL I M+L N+ D Q+C GS
Sbjct: 136 TVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.5 bits (88), Expect = 4e-05
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 190 VNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 366
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 367 LLSAAA 384
+ S +
Sbjct: 122 MHSVTS 127
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 37.1 bits (82), Expect = 2e-04
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Frame = +1
Query: 187 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN--AGEWGCSTWLVSSERLWRP 357
+V + L +R A I + + +Q + W+D+RL +N G T L + R+W P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 358 DVVLLSAAATTGGXYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKF 528
D+ + + R+ NGSV + R+ ++ M L + D Q C +
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178
Query: 529 GS 534
S
Sbjct: 179 AS 180
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 34.3 bits (75), Expect = 0.001
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +1
Query: 187 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN--AGEWGCSTWLVSSERLWRP 357
VV + + +R + I + +Q + W+D+RL +N G T L + R+W P
Sbjct: 60 VVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 358 DVVLLSAAATTGGXYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKF 528
D+ + + R+ NGSV + R+ ++ M L + D Q C +
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178
Query: 529 GS 534
S
Sbjct: 179 AS 180
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.3 bits (70), Expect = 0.006
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Frame = +1
Query: 160 GTPPPYSKIVVNLTLH-LRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVS 336
G PP + V +T++ L +++ E + + + W D RL++ G T V
Sbjct: 32 GGPP----VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKK-RTGVETLSVG 86
Query: 337 SE---RLWRPDVVLLSAA------ATTGGXYALRARVSNNGSVSWIKRLDISTPISMQLD 489
SE +W PD ++ ATT + R+ ++GS++ RL I+ M L
Sbjct: 87 SEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQ 143
Query: 490 NWXRDMQTCXXKFGS 534
+ D Q C + S
Sbjct: 144 YFPMDRQLCHIEIES 158
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 31.1 bits (67), Expect = 0.013
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Frame = +1
Query: 223 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLSAAATTGGXY 402
I E I L W D+RL+++ E + +E++W PD + +
Sbjct: 75 ISEVNMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDV 134
Query: 403 ALR---ARVSNNGSVSWIKRLDISTPISMQLDNWXRDMQTCXXK---FGSXXAXVVTXW 561
R R+S +GSV++ R + M L + D Q C + +G VV W
Sbjct: 135 TERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYW 193
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.013
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Frame = +1
Query: 274 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLSAA------ATTGGXYALRARVSN 426
W D RL++ G T V SE +W PD ++ ATT + R+ +
Sbjct: 67 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 122
Query: 427 NGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
+GS++ RL I+ M L + D Q C + S
Sbjct: 123 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 31.1 bits (67), Expect = 0.013
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Frame = +1
Query: 274 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLSAA------ATTGGXYALRARVSN 426
W D RL++ G T V SE +W PD ++ ATT + R+ +
Sbjct: 6 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 61
Query: 427 NGSVSWIKRLDISTPISMQLDNWXRDMQTCXXKFGS 534
+GS++ RL I+ M L + D Q C + S
Sbjct: 62 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 327 PSAAAPLPCVPTQS 286
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,426
Number of Sequences: 438
Number of extensions: 4528
Number of successful extensions: 78
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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