Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_N05
         (1093 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.89 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 659  PXPPPPPPXGG 627
            P PPPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 363  KKXPPPPPPP 392
            ++ PPPPPPP
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 363  KKXPPPPPPP 392
            ++ PPPPPPP
Sbjct: 1353 QQPPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 659 PXPPPPPPXGG 627
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 659 PXPPPPPP 636
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 351 PPXXKKXPPPPPP 389
           PP  K  PPPPPP
Sbjct: 338 PP--KPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 365 KXPPPPPPP 391
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 659  PXPPPPPP 636
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
 Frame = -2

Query: 990 APPPPXXXHPPPQXPXX---TXXXXSPPPGG 907
           AP P    H  PQ P           PPPGG
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 321 KKPXXXKXXXPPXXKKXPPPPPPP 392
           + P   +   PP   + PPP  PP
Sbjct: 29  QSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,624
Number of Sequences: 438
Number of extensions: 8591
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36632304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)