Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_N03
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.090
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 633 PPPPPPPXXXXKKXXPPXPPKXK*XXGG 550
           PPPPPPP        PP PP      GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 633 PPPPPPPXXXXKKXXPPXPP 574
           PPPPPPP        PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 632 PPPPPPXXXXKKKXXXPPPQKXNXXXGG 549
           PPPPPP          PPP       GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 633 PPPPPPPXXXXKKXXPPXPP 574
           PPPPPPP        PP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 633 PPPPPPPXXXXKKXXPPXPP 574
           PPPPPPP        PP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 633 PPPPPPPXXXXKKXXPPXPP 574
           PPPPPP      +  PP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 632 PPPPPPXXXXKKKXXXPPPQKXN 564
           PPPPPP    KK+    P Q  N
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSGN 46


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 633  PPPPPPPXXXXKK 595
            PPPPPPP    KK
Sbjct: 1096 PPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,842
Number of Sequences: 5004
Number of extensions: 25672
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)