Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_N02
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    77   3e-15
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    76   4e-15
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    31   0.11 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   4.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 45/90 (50%), Positives = 55/90 (61%)
 Frame = +2

Query: 53  FSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRET*PVPG 232
           F  P  G    +P++      GKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+    PG
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL-DRPG 64

Query: 233 SKNQQEKKIGGRLSPIIENSSDXFCVGVVG 322
           SK  + + +      IIE +     VGVVG
Sbjct: 65  SKMHKREIL--EAVTIIE-TPPMVVVGVVG 91


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 44/90 (48%), Positives = 55/90 (61%)
 Frame = +2

Query: 53  FSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRET*PVPG 232
           F  P  G    +P++      GKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+    PG
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL-DRPG 64

Query: 233 SKNQQEKKIGGRLSPIIENSSDXFCVGVVG 322
           SK  + + +      +IE +     VGVVG
Sbjct: 65  SKMHKREIL--EAVTVIE-TPPMVVVGVVG 91


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 8   ILVCXLSSSMSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKA 130
           I +C + +++  + ++S+  +GL DSI     +VI GK+++
Sbjct: 248 IYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIES 288


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = -2

Query: 267 LPPIFFSC*FFEPG------TGQVSLTTWVIPAL 184
           LPP+   C  F  G      +G  S   WV+PAL
Sbjct: 447 LPPMMIGCFMFPAGIFWLSWSGHYSYVNWVVPAL 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,452
Number of Sequences: 5004
Number of extensions: 36109
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)