Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_N02
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    73   2e-13
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    72   5e-13
09_04_0437 - 17587944-17588909                                         29   4.2  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    29   4.2  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    27   9.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 38/68 (55%), Positives = 46/68 (67%)
 Frame = +2

Query: 35  MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
           MS +K F  P  G    +P++      GKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1   MSHRK-FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVRE 59

Query: 215 T*PVPGSK 238
               PGSK
Sbjct: 60  V-EKPGSK 66


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +2

Query: 35  MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
           MS +K F  P  G    +P++      GKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1   MSHRK-FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVRE 59

Query: 215 T*PVPGSK 238
               PGSK
Sbjct: 60  V-EKPGSK 66


>09_04_0437 - 17587944-17588909
          Length = 321

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +2

Query: 2   TGILVCXLSSSMSAQKIFSTPXMGLWDSIPKR 97
           TG+L   +S++M  Q ++ST  MGL+D++ +R
Sbjct: 82  TGLL-SGVSATMLRQTLYSTTCMGLYDTLKRR 112


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 184 ITDKSSQMNRFARVVFRERLDLTTDDDGTSFWDRIP*THXRGAENFLCXHAGRQSAN*NA 5
           ++DK+     F ++V +E    T+  +  S W  +  +  +G E  LC H G      NA
Sbjct: 441 LSDKNLDYESFVKMVKKEVFVRTSIPNSLSEWLCLMSSGVKGFEYLLCHHDGLMEPRQNA 500

Query: 4   S 2
           S
Sbjct: 501 S 501


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 23   LSSSMSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPS 151
            LS ++ A     TP M LW  +P   P   G  +  FP   PS
Sbjct: 1855 LSVALPADLSVDTPPMSLWHPLP--SPQASGPMLSQFPGAQPS 1895


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,981
Number of Sequences: 37544
Number of extensions: 272501
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)