Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_N02
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 79 3e-15
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 79 3e-15
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 79 3e-15
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 79 3e-15
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 34 0.075
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 34 0.075
U39472-9|AAK31390.2| 327|Caenorhabditis elegans Serpentine rece... 28 6.5
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MSAQKIFSTPXMGLWDSIPKRGPVVIGGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVRE 214
MS +K FS P G PK+ G++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRK-FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRD 59
Query: 215 T*PVPGSK-NQQE 250
PGSK N++E
Sbjct: 60 V-DKPGSKVNKKE 71
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 52 FQHPXHGSMGFYPKKRSRRHR 114
F P HG MGF PKKRSR +R
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYR 26
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 52 FQHPXHGSMGFYPKKRSRRHR 114
F P HG MGF PKKRSR +R
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYR 26
>U39472-9|AAK31390.2| 327|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 33 protein.
Length = 327
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 201 TWLEKPDRSRVQKINKKRKSVEGCH 275
+W++K + ++K+ K KS GCH
Sbjct: 293 SWIKKNRQMHIRKMTKVNKSENGCH 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,056,808
Number of Sequences: 27780
Number of extensions: 221061
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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