Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M24
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069683-1|AAL39828.1|  993|Drosophila melanogaster LD45449p pro...    29   5.0  
AE014298-2035|AAF48374.1|  993|Drosophila melanogaster CG9411-PA...    29   5.0  
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    29   8.7  

>AY069683-1|AAL39828.1|  993|Drosophila melanogaster LD45449p
           protein.
          Length = 993

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
 Frame = +2

Query: 353 QKNPPXXRPKGVYXPCFQNXGIXPXFLPXXKTPGXXFAQSX*KGPXKLSFGNPPQ---FP 523
           Q  PP  +P   Y P     G  P  L     P   +      GP KL +G PP     P
Sbjct: 147 QYGPPPPKPAPQYGPPPTQYGPPPP-LKIQHRPAPQY------GPPKLQYGPPPPPQLLP 199

Query: 524 XXFCSPXFKRGKKXSEFFGNP 586
               +P FK   + +  +G P
Sbjct: 200 SPHAAPLFKPAHQPATSYGPP 220


>AE014298-2035|AAF48374.1|  993|Drosophila melanogaster CG9411-PA
           protein.
          Length = 993

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
 Frame = +2

Query: 353 QKNPPXXRPKGVYXPCFQNXGIXPXFLPXXKTPGXXFAQSX*KGPXKLSFGNPPQ---FP 523
           Q  PP  +P   Y P     G  P  L     P   +      GP KL +G PP     P
Sbjct: 147 QYGPPPPKPAPQYGPPPTQYGPPPP-LKIQHRPAPQY------GPPKLQYGPPPPPQLLP 199

Query: 524 XXFCSPXFKRGKKXSEFFGNP 586
               +P FK   + +  +G P
Sbjct: 200 SPHAAPLFKPAHQPATSYGPP 220


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 485 PXKLSFGNPPQFPXXFCSPXFKRGKKXSEFFGNPXGFXFV 604
           P   S+G PPQ P     P   R  K S  +G P    FV
Sbjct: 462 PPSSSYGAPPQAPVSSYLPPASRPSKPSSSYGAPSVSSFV 501


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,159,340
Number of Sequences: 53049
Number of extensions: 425593
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)