Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M23
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.36 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.63 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.5  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   3.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   4.4  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    26   5.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 240 VRVHRANTGRSSNELDRQTTELERR 314
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 18/58 (31%), Positives = 22/58 (37%)
 Frame = +2

Query: 656 GSPAVISXPPRXXPASRXXPXXXXPXXPPXAPXXAGXXSXXXPAXPAAARXXXPXPPG 829
           G+ +  S PP   P S   P    P  PP AP      +   P  P +A    P P G
Sbjct: 407 GNASRTSTPPVPTPPS--LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +2

Query: 680  PPRXXPASRXXPXXXXPXXPPXAPXXAGXXSXXXPAXPAAARXXXPXP 823
            PP+    +   P    P  P   P  AG  S   P  PA++    P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 66
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 418 RARVSNNGSVSWIKRLDISTPISMQSDNWPNDMQTCTFKFGSRMHNSDEMDXVI 579
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+   +  ++
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHSPTHVHNLV 638


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 383 TRLQPPPGTTLSXPVYLITAPSPG*SAWTLALQFLCSQTIGPTTCRLARSSSVL 544
           + LQP   T+ S  +Y  + P+P   A + +   L SQT+  TT   +R  S L
Sbjct: 237 SHLQPTSATSSSSRLYP-SRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPL 289


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 424 RVSNNGSVSWIKRLDISTPISMQSDNWPNDMQTCTFKFGSRMHNSDEMDXVIDK 585
           R S N S S +KR  +S+ +S +     +D  +   K  ++ H S  +   I K
Sbjct: 31  RSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILK 84


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 46   MSTTYIILLPFLLTCAIASAAECENATSLS 135
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,096
Number of Sequences: 5004
Number of extensions: 56447
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)