Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_M19
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715 30 2.0
08_02_1255 + 25636634-25636956,25637462-25637894 30 2.0
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 4.5
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 4.5
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 29 4.5
06_03_0757 + 24267599-24268882 29 6.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.9
01_06_0146 + 26969011-26969995,26970878-26970930 25 9.2
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 655 PPPARKSESXXXXXSGP-PPXXPSLSXLXRAGXXXRXAXXPRXSXRXXPAPXPPPXXXP 828
PPPA +S S P PP P L P + + PAP PPP P
Sbjct: 718 PPPANRSNGP----SAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAP 772
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 242 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 358
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
Length = 462
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 221 ETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTLVEA*XGTATRGCPH 400
E C + V V + D RS L T++ ++ G H A L T +E G +R C H
Sbjct: 57 EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113
Query: 401 XRGLRSPRPVYL 436
R +SP + L
Sbjct: 114 FRPKQSPTTLLL 125
>08_02_1255 + 25636634-25636956,25637462-25637894
Length = 251
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = -3
Query: 458 IXEXEPXXDTRAAESVVPXGGGSRX*QXXVRPPQAFRGHQPSAAAPFPCVPTQSFVDPIH 279
+ E E D AE GGG+R + PP+ Q S+ P P SF P
Sbjct: 179 VVEEEDEEDDSDAEQCSGSGGGNRRREPTFPPPRLSLHAQKSSLTPRSSNPASSFRSPRS 238
Query: 278 LKICQYPHGG 249
+ + G
Sbjct: 239 FSLSDLQNAG 248
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 77 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPPVLQNRSQPD 211
+LL A A + SL +DSL +++PPV Q + +P+
Sbjct: 414 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 344 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 180
H P AAA P VP++ P L + GG GL S S + G + D G+ G
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 307 GTQGNGAAALGWCPRNACGGLTWXCYXRLPPPXGTTLSAARVS 435
G G AA W R A GG+ + Y +P GTTL A R++
Sbjct: 428 GGGGEPEAAAEWRAR-AVGGMEYGWYRAVPGGTGTTLLALRLA 469
>06_03_0757 + 24267599-24268882
Length = 427
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 303 SWN-AGEWGCSTWLVSSERLWRPDXXLLXAAAPTXGDYA 416
SW AG W C + ++ WRP L APT DY+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPT-ADYS 385
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 371 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 204
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = +1
Query: 703 PPPXXPSLSXLXRAGXXXRXAXXPRXSXRXXPAPXPPPXXXP 828
PPP P+ + R PAP PPP P
Sbjct: 45 PPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADP 86
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Frame = +1
Query: 652 HPPPARKSESXXXXXSGPPPXXP 720
H PP + S PPP P
Sbjct: 6 HSPPPEPATDGDDAQSHPPPPTP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,074
Number of Sequences: 37544
Number of extensions: 470999
Number of successful extensions: 1211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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