Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_M19
(829 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 37 3e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 3e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 34 0.001
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.003
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.003
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.007
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.017
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.28
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 36.7 bits (81), Expect = 3e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDXXLLXAA 392
++ E + A L++ W+D L WN E+ G ++ +LW+PD + +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 195 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 371
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 372 XXLLXAAAP 398
L A P
Sbjct: 92 TILYNNADP 100
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 34.3 bits (75), Expect = 0.001
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 195 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 362
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 363 RPDXXL 380
PD L
Sbjct: 104 LPDIVL 109
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.9 bits (74), Expect = 0.002
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 201 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 371
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPD 119
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.002
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXL 380
++ +W D +L W+ E+G L V S+ +WRPD L
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 192 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 365
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 366 PDXXL 380
PD L
Sbjct: 113 PDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 192 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 365
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 366 PDXXL 380
PD L
Sbjct: 113 PDIVL 117
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 33.5 bits (73), Expect = 0.002
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 162 RTIGSLPPYSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 335
R +G+ + + L L L N++ T + ++ W D +L WN ++ G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 336 WLVSSERLWRPDXXL 380
V SE +W PD L
Sbjct: 95 LHVPSEHIWLPDIVL 109
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.1 bits (72), Expect = 0.003
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 192 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 365
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 366 PDXXLLXAAAPTXGDYALR 422
PD L A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.1 bits (72), Expect = 0.003
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXL 380
++ W D +L WN E+G L V SE +W PD L
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.9 bits (69), Expect = 0.007
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXLLXAA 392
L++ W D + WN ++G L + RLW+PD + +A
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.7 bits (66), Expect = 0.017
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 234 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 371
I E + T + + +W+D+RL++ G+ + + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.6 bits (56), Expect = 0.28
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 371
+ +W D RLS+ S + ER+WRPD
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 338 PSAAAPFPCVPTQS 297
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 136 GQ*CCVFAFCRTSYSTSEEKXVTR 65
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,056
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 39
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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