Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M17
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.36 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   4.4  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.8  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   7.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 242 VRVHRANTGRSSNELDRQTTELERR 316
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 449 SPGIKRLDISTPISMQLDN-WPNDMQTCTFKFGSRMHXSDEMDXVIDKRIYXYV 607
           SP IK ++  T         WP D+ T    FG+     D  D + D+ +Y  V
Sbjct: 85  SPIIKNIEGRTKYGEAYHGYWPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMV 138


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 5   GFTRDSFNRSVVIKCRRLILFXLPVSPHLCYS 100
           GF RD FN    I C  L+ F   +  + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 380 C*TRLQPPPGTTLSAPVYLITAPSPGIKRLDISTP 484
           C   L+PPP   + +  Y ++ PSP +    IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 18  IASIDQLS*NVDDLYYSXYRFLLTCAIASAAECENATSL 134
           +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 83  VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,982
Number of Sequences: 5004
Number of extensions: 61677
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)