Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M13
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    29   0.80 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.80 
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   7.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   9.9  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 259 NSALAADLLFEKAYTQYRLNSPKEALQTVDSAPAIDTRF 375
           N    A L   +A    RL  P+EAL   D+A AID+ +
Sbjct: 256 NKETVAKLYMNRATVLLRLKRPEEALSDSDNALAIDSSY 294


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 177 ESISLQSGMLSPTPQLQGGSSDINQCQE 260
           E++ L +G L P P+ + G SDIN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 102 FCQSSDYERALKAAGQNTADSTK*AESISLQSGMLSPTPQLQGGSSDINQCQELSVSSR 278
           FCQ +D ERALK    +  D     E   +     +    +     DIN+   + VS R
Sbjct: 743 FCQQNDIERALKMVRVHGPDQ---QELYIMMLNCFASLENVDSWYQDINEIVNIIVSQR 798


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 148 KILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAADLLF-----EKAYTQYR 312
           + +  +P+E   + C    +L L +FK AL  L +           +      +A+  + 
Sbjct: 330 RAVHASPSEFATWACLADVYLHLEDFKSALLALNSCPMYTYYERDAYPLPPSARAHLPFP 389

Query: 313 LNSPKEALQTVDSA 354
           +N PKE L+  ++A
Sbjct: 390 VNFPKEELEVENNA 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,532
Number of Sequences: 5004
Number of extensions: 33057
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)