Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M09
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.1  
02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454...    29   4.7  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     29   6.3  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.3  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.3  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/71 (25%), Positives = 19/71 (26%)
 Frame = +2

Query: 575 PAPXXXXXGXGXGXXPXSXQXPXXXGXXPAPXPKXGPXPXQXGXXGXXXTXXXXPTSXXG 754
           PAP     G G G  P            P P P   P P   G  G        P     
Sbjct: 336 PAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRA 395

Query: 755 XXXPPXXRVAG 787
              PP  +  G
Sbjct: 396 RGPPPFKKSPG 406


>02_01_0606 +
           4543031-4543177,4543287-4543709,4543836-4543952,
           4544064-4544423
          Length = 348

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 431 HGRGERSPRPVVAAAFSSTTSGLHKRSEDTSPSAAAPLPCVP 306
           H  G+  P P+ +AA +S  SG        +P+AA P P VP
Sbjct: 248 HNHGQPPP-PLQSAAQNSDGSGKSAGKPPHAPAAAPPAPVVP 288


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
 Frame = +2

Query: 323 GLQHLGWCPRNA-----CGGLTWY 379
           G +H+ WC R+A     CGG +WY
Sbjct: 24  GWEHMFWCGRSALGIRLCGGTSWY 47


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 248 VHRANTGRSSNELDRQTTELERRGVG 325
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 77  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 217
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,642,836
Number of Sequences: 37544
Number of extensions: 421599
Number of successful extensions: 1421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)