Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M06
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.034
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.32 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 747 PPPPPPXXXXXXXXXPPPPXPP 812
           PPPPPP         PPPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 750 PPPPPXXXXXXXXXPPPPXPPXXXXXXKK 836
           PPPPP          PPP PP      +K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 747 PPPPPPXXXXXXXXXPPPPXPP 812
           PPPPPP         PPPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 747 PPPPPPXXXXXXXXXPPPPXPP 812
           PPPPPP         PPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 741 KXPPPPPPXXXXXXXXXPPPPXPP 812
           K PPPPPP          P P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP 753



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 748 PPPPXXXXXXXXXXPPPPPXPXXXXXXXKKFF 843
           PPPP          PPPPP P        +++
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
 Frame = +3

Query: 681 PXXPPPXGXGXFFFFFXXKKKXPPPPPP----------XXXXXXXXXPPPPXPP 812
           P  PPP            KK+ PPPPPP                   PPPP PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 681 PXXPPPXGXGXFFFFFXXKKKXPPPPPPXXXXXXXXXPPPP 803
           P  PPP            + +  PPPPP          PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,664
Number of Sequences: 5004
Number of extensions: 22098
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)