Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_M04
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    32   0.47 
07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.5  
07_01_0479 + 3606663-3607448                                           30   2.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   3.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.3  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 425  GGKPXPPPXVFXXRXXPPXKKXGGXXPPP 511
            GG P PPP        PP    GG  PPP
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPP 1186



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +3

Query: 414  PPPXGG----SXXPPPGFFXXGXPPXXKXXGGLXPP 509
            PPP GG       PPP  F  G PP     GG+ PP
Sbjct: 1151 PPPVGGLGGPPAPPPPAGFRGGTPP-PNAHGGVAPP 1185


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
 Frame = +3

Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXK----XXGGLXPP 509
           GG P P GG    PPG    G PP         GG  PP
Sbjct: 95  GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPP 133


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 393 FXXXGGGPPPXGGSXXPPPGFFXXGXPP 476
           F    G PP   G   PPPG F  G PP
Sbjct: 187 FQRPPGVPPAFPGGPPPPPGPFMRGPPP 214


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 414 PPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
           PPP GG    PP     G PP  +   G  PP
Sbjct: 12  PPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPP 43


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 414 PPPXGGSXXPPP--GFFXXGXPPXXKXXGGLXPP 509
           PPP G S  PPP  G    G PP     G   PP
Sbjct: 357 PPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,778
Number of Sequences: 37544
Number of extensions: 276235
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)