Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_M04
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 39 0.005
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 34 0.11
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 34 0.11
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.74
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.74
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.74
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 0.97
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 0.97
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 0.97
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.0
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.0
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.9
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 414 PPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
PPP G PPP F G PP GG+ PP
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 425 GGKPXPPPXVFXXRXXPPXKKXGGXXPPP 511
GG P PPP +F PP GG PPP
Sbjct: 81 GGIPPPPP-MFAGGIPPPPPMMGGIPPPP 108
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -3
Query: 508 GGXXPPXFFXXGGXPXXKNPGGGXXLPP--XGGGPPPXXKKXXXGXPQ 371
GG PP GG P GG PP G PPP PQ
Sbjct: 81 GGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQ 128
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 414 PPPXGGSXXPPPGFFXXGXPPXXKXXGGLXP 506
PPP G PPP F PP G+ P
Sbjct: 97 PPPMMGGIPPPPPMFGAPPPPPPPSGLGVAP 127
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXP 506
GGPP GG PPPG G P GG+ P
Sbjct: 190 GGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLP 222
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXP 506
GGPP GG PP G G PP GG P
Sbjct: 172 GGPPGHGGMGGPP-GHGGQGGPPGHGGMGGPPP 203
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
GGPP GG PP G PP GG P
Sbjct: 181 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGP 214
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXP 506
GGPP GG PPPG G P GG+ P
Sbjct: 470 GGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLP 502
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXP 506
GGPP GG PP G G PP GG P
Sbjct: 452 GGPPGHGGMGGPP-GHGGQGGPPGHGGMGGPPP 483
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
GGPP GG PP G PP GG P
Sbjct: 461 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGP 494
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -3
Query: 505 GXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP GG P PGG LPP GGPPP
Sbjct: 733 GGLPPI---TGGPPPPPPPGG---LPPISGGPPP 760
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 508 GGXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP G P P GG LPP GGPPP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGG--LPPITGGPPP 744
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 PPXGGSXXPPPGF-FXXGXPPXXKXXGGLXP 506
PP G PPPG G PP GGL P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Frame = +3
Query: 408 GGPPPXGGSXXPPP---GF--FXXGXPPXXKXXGGLXPP 509
GG PP G PPP G G PP GG PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -3
Query: 505 GXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP GG P PGG LPP GGPPP
Sbjct: 733 GGLPPI---TGGPPPPPPPGG---LPPISGGPPP 760
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 508 GGXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP G P P GG LPP GGPPP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGG--LPPITGGPPP 744
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 PPXGGSXXPPPGF-FXXGXPPXXKXXGGLXP 506
PP G PPPG G PP GGL P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Frame = +3
Query: 408 GGPPPXGGSXXPPP---GF--FXXGXPPXXKXXGGLXPP 509
GG PP G PPP G G PP GG PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -3
Query: 505 GXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP GG P PGG LPP GGPPP
Sbjct: 316 GGLPPI---TGGPPPPPPPGG---LPPISGGPPP 343
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 508 GGXXPPXFFXXGGXPXXKNPGGGXXLPPXGGGPPP 404
G PP G P P GG LPP GGPPP
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGG--LPPITGGPPP 327
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 PPXGGSXXPPPGF-FXXGXPPXXKXXGGLXP 506
PP G PPPG G PP GGL P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 320
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Frame = +3
Query: 408 GGPPPXGGSXXPPP---GF--FXXGXPPXXKXXGGLXPP 509
GG PP G PPP G G PP GG PP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G PP
Sbjct: 283 GSPPPPRTGSPPPPP----TGSPPPPPAGGSPPPP 313
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G L PP
Sbjct: 308 GSPPPPRAGSPPPPPP--PRGSPP----TGSLPPP 336
Score = 25.0 bits (52), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 393 FXXXGGGPPPXGGSXXPPPGF 455
F G PPP GG P GF
Sbjct: 85 FGGRTGSPPPFGGFSGAPQGF 105
Score = 24.6 bits (51), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 210 GFGXMXXFGXSQXPXGGIWGN 272
GFG FG +Q GG GN
Sbjct: 52 GFGSQSGFGNNQGSQGGFGGN 72
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G PP
Sbjct: 268 GSPPPPRTGSPPPPP----TGSPPPPPAGGSPPPP 298
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G L PP
Sbjct: 293 GSPPPPRAGSPPPPPP--PRGSPP----TGSLPPP 321
Score = 25.0 bits (52), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 393 FXXXGGGPPPXGGSXXPPPGF 455
F G PPP GG P GF
Sbjct: 70 FGGRTGSPPPFGGFSGAPQGF 90
Score = 24.6 bits (51), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 210 GFGXMXXFGXSQXPXGGIWGN 272
GFG FG +Q GG GN
Sbjct: 37 GFGSQSGFGNNQGSQGGFGGN 57
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G PP
Sbjct: 262 GSPPPPRTGSPPPPP----TGSPPPPPAGGSPPPP 292
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
G PPP GS PPP G PP G L PP
Sbjct: 287 GSPPPPRAGSPPPPPP--PRGSPP----TGSLPPP 315
Score = 25.0 bits (52), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 393 FXXXGGGPPPXGGSXXPPPGF 455
F G PPP GG P GF
Sbjct: 64 FGGRTGSPPPFGGFSGAPQGF 84
Score = 24.6 bits (51), Expect(2) = 0.97
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 210 GFGXMXXFGXSQXPXGGIWGN 272
GFG FG +Q GG GN
Sbjct: 31 GFGSQSGFGNNQGSQGGFGGN 51
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Frame = +3
Query: 372 WGXPXXXFXXXGGGPPPXG-----GSXXPPPGFFXXGXPPXXKXXGGLXPPXXXXXKXGA 536
+G P G GPPP G GS PP G PP G PP GA
Sbjct: 397 FGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGA 456
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 414 PPPXGGSXXPPPGFFXXGXPP 476
PPP G PPP F G PP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPP 318
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 414 PPPXGGSXXPPPGFFXXGXPP 476
PPP G PPP F G PP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPP 318
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 405 GGGPPPXGGSXXPPPGFFXXGXPPXXKXXGGLXPP 509
GG PPP GGS P G PP G+ PP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGGPPPRL----GMPPP 1601
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGF--FXXGXPPXXKXXGGLXPP 509
G PPP S PPG PP + GG+ PP
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 408 GGPPPXGGSXXPPPGF--FXXGXPPXXKXXGGLXPP 509
G PPP S PPG PP + GG+ PP
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,790,752
Number of Sequences: 27780
Number of extensions: 182699
Number of successful extensions: 716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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