Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_M01
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 34 0.16
09_02_0082 - 4060018-4061604 32 0.48
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 30 1.9
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 29 4.5
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 29 4.5
04_01_0041 - 464695-464850,467485-469029 29 5.9
10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430 28 7.8
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 28 7.8
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -2
Query: 91 EEEKALTKEGMAEAAETNKGTISSMNRSSS 2
E+++ LTK G + +ET+KG++ S++RS S
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
>09_02_0082 - 4060018-4061604
Length = 528
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +1
Query: 400 PSLKIPVTVDLCXTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPDXPN 579
PS+ +P+ + + TTA + ++ ++ R I LAL A C ++P P
Sbjct: 117 PSVPVPLGLTMSPTTAHYSFSYGGASSSSATPRAPIAPLALRAPAPHLCVPRVLSPPAPT 176
Query: 580 PRIXYXTHPRIYIPFPSIP 636
P + P P P +P
Sbjct: 177 PPVLATHVPTPPAPAPPVP 195
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCXTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 561 QPRXSKSPHXIXXPPQNLHPFSINPLDAVLKREFRA 668
+PR SK+PH + PP NL S+ + L+ + RA
Sbjct: 950 KPRRSKAPHALHLPPINLS--SLTKVPTSLRAQIRA 983
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCXTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
Length = 156
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +3
Query: 462 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRL---HQPRXSKSPHXIXXPPQNLHPFSIN 632
R CA L S A +H PL + L +P S H + PP LHP S
Sbjct: 2 RRWCAAAGLGLGRRLLSSSVSAPAHRPLPAHLIPSPRPLPFSSRHHLLTPPLGLHPSSPP 61
Query: 633 PL 638
P+
Sbjct: 62 PM 63
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 525 ASSHPPLRSRLHQPRXSKSPHXIXXPPQNLHPFSINP 635
+SS PPL +R PR + S PP L PFS P
Sbjct: 12 SSSQPPLPAR-RLPRRNPSLPFPLRPPHRLSPFSAPP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,852
Number of Sequences: 37544
Number of extensions: 403670
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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