Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_L23
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 275 3e-74
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 64 1e-10
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 48 7e-06
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 48 7e-06
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 40 0.002
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 33 0.36
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.5
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.4
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 275 bits (674), Expect = 3e-74
Identities = 142/256 (55%), Positives = 170/256 (66%), Gaps = 8/256 (3%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 589 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATXYGKIAVNXXFGRDX 768
NTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNTGHPVF T YGKI VN +GR
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265
Query: 769 VLNWIMFGKNGPEIVF 816
LNW+ FG NG EIVF
Sbjct: 266 PLNWLAFGLNGAEIVF 281
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/130 (29%), Positives = 68/130 (52%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPV 714
VI S E + ++ +N+ +I G +G +RK+HIP + E Y+ G+TG
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147
Query: 715 FATXYGKIAV 744
F T Y I V
Sbjct: 148 FKTKYATIGV 157
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 48.4 bits (110), Expect = 7e-06
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +1
Query: 397 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 570
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 571 HSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFATXYGK 735
S L+NT VI G + KHRK H+ + GD F ES+ + G + T G+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDVGR 127
Query: 736 IAV 744
I +
Sbjct: 128 IGI 130
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 48.4 bits (110), Expect = 7e-06
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Frame = +1
Query: 319 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 489
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 490 -PTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----I 651
P+ + + E+A + +V + E+ + L+NT V G + GKHRK H I
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDI 167
Query: 652 PRVGDFNESNYYMEGNTGHPVFATXYGKIAVNXXF 756
P F ES G V T G+I + +
Sbjct: 168 PGKITFKESKTLTAGQ-DLTVVDTDVGRIGIGICY 201
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Frame = +1
Query: 337 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 483
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 484 D--GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPR 657
D GP T L LA KY + +V ++ER L+NT + G +GKHRK +
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK--VMP 161
Query: 658 VGDFNESNYYMEGNTGHPVFATXYGKI-AVNXXFGRDXVLNWIMFGK 795
G + +G+T PV+ T GKI AV R +L M+ K
Sbjct: 162 TGLERVFWGFGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYAK 207
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 32.7 bits (71), Expect = 0.36
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +1
Query: 487 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGD 666
GP T L +A KY + +V ++ER+ L+ + + G +GKHRK +P +
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK-LMPTALE 169
Query: 667 FNESNYYMEGNTGHPVFATXYGKI-AVNXXFGRDXVLNWIMFGKNGPEI 810
+ +G+T PV+ T GKI A+ + +L ++GK G EI
Sbjct: 170 -RIIWGFGDGST-IPVYDTPLGKIGALICWENKMPLLRTALYGK-GIEI 215
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +1
Query: 412 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 591
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 592 TAVVISDTGNVIGK 633
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 488 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,271
Number of Sequences: 37544
Number of extensions: 479032
Number of successful extensions: 1347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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