Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_L22
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.41
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 31 0.95
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 1.7
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.8
07_03_0177 - 14770777-14772045 29 5.1
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 5.1
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 26 5.8
03_02_0436 + 8427018-8427707,8429005-8429544 29 6.7
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 28 8.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -1
Query: 577 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXXXXPPPXP-PXXXXXXXXFNXXPPRXXGGGG 401
PPPPPPP PPP P PP GG
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 400 KK*XFXXXGXGGXXPPPPR 344
KK GG PPPP+
Sbjct: 373 KK--------GGPPPPPPK 383
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 31.5 bits (68), Expect = 0.95
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 426 PPXGGGGXXKNXFFXXXEXXGPXPPPP 346
PP GGGG + F + P PPPP
Sbjct: 43 PPGGGGGDRRGGFQLPPDAAPPPPPPP 69
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -1
Query: 481 PPPXPPXXXXXXXXFNXXPPRXXGGGGKK*XFXXXGXGGXXPPPP 347
PPP PP PP GG G + G GG PPP
Sbjct: 357 PPPNPPYSGGAPGGQGSLPPSYDGGYGGR---PMPGGGGPGAPPP 398
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 34 LGGGXXXPPGGGGG 75
LGGG PPGGGGG
Sbjct: 101 LGGGGARPPGGGGG 114
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 37 GGGXXXPPGGGGGXXLFXGGG 99
GGG PGGGGG GGG
Sbjct: 192 GGGPGRAPGGGGGGGGLGGGG 212
>07_03_0177 - 14770777-14772045
Length = 422
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 34 LGGGXXXPPGGGGGXXLFXGGG 99
LGGG GGGGG F GGG
Sbjct: 361 LGGGGGLGGGGGGGGGGFGGGG 382
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 37 GGGXXXPPGGGGGXXLFXGGG 99
G G PPGGGGG GGG
Sbjct: 42 GRGGRGPPGGGGGRGYEPGGG 62
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 26.2 bits (55), Expect(2) = 5.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 402 PPPPXXRGGXXLKKKKKXXXXGGXGGG 482
PPPP R KK+ + G GGG
Sbjct: 124 PPPPRERRFLVAKKRARRRRNGANGGG 150
Score = 21.0 bits (42), Expect(2) = 5.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 558 GGGGGGG 578
GGGGGGG
Sbjct: 150 GGGGGGG 156
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 417 GGGGXXKNXFFXXXEXXGPXPPPP 346
GGGG ++ FF P PPPP
Sbjct: 99 GGGGGQQSPFFPLLPPLPPQPPPP 122
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 345 RGGGGXXPPFPXXKKXYFXPPPP 413
RGGGG PP K PPPP
Sbjct: 54 RGGGGRAPPRAAGKSPAPPPPPP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,556
Number of Sequences: 37544
Number of extensions: 525358
Number of successful extensions: 25828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14652
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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