Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L22
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    30   2.6  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    29   3.5  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   6.0  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   6.0  

>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 336 PXXRGGGGXXPPFPXXKKXYFXPPPPXXRGG 428
           P   GGGG  PP       YF  PP    GG
Sbjct: 73  PVGGGGGGGAPPAASNDAGYFATPPAAPAGG 103


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 37  GGGXXXPPGGGGGXXLFXGGGXK 105
           GGG   P GGGGG     GGG +
Sbjct: 322 GGGGDFPAGGGGGGYSTGGGGGR 344


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 348 GGGGXXPPFPXXKKXYFXPPPP 413
           GGG   PP P  ++ Y  PPPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 348 GGGGXXPPFPXXKKXYFXPPPP 413
           GGG   PP P  ++ Y  PPPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,091,101
Number of Sequences: 27780
Number of extensions: 229450
Number of successful extensions: 5351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)