Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L21
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 430 PPPXXXKXXPPPPPP 474
           PPP      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 430 PPPXXXKXXPPPPPP 474
           PPP      PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 421 GGGPPPXXXKXXPPPPPP 474
           G GPPP      PPPPPP
Sbjct: 772 GAGPPP------PPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 421 GGGPPPXXXKXXPPPPPPK 477
           G  P P   +  PPPPPP+
Sbjct: 349 GSIPLPPQGRSAPPPPPPR 367



 Score = 22.2 bits (45), Expect(2) = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 448 KXXPPPPPP 474
           K  PPPPPP
Sbjct: 309 KRPPPPPPP 317



 Score = 21.8 bits (44), Expect(2) = 8.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 457 PPPPPPK 477
           PPPPPP+
Sbjct: 338 PPPPPPR 344


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 473 GGGGGGXFFXXXGGGPPPXXG 411
           GGG GG  F    GGPPP  G
Sbjct: 187 GGGFGG--FGGGSGGPPPGPG 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.157    0.584 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,691
Number of Sequences: 5004
Number of extensions: 12910
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)