Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L21
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 436  PXXXKXXPPPPPPK 477
            P      PPPPPP+
Sbjct: 1852 PVSGSPEPPPPPPR 1865



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 638  GXPXPPPPP 664
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 434  PXXXKKXPPPPPP 472
            P      PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 447 KKXPPPPPP 473
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 448 KXXPPPPPP 474
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 166  PXKTXTPLGFWGPP 207
            P    TP  FW PP
Sbjct: 1154 PHLPFTPFNFWNPP 1167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.157    0.584 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,046
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)