Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L18
         (1448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1070 - 25814741-25815850                                         32   1.3  
01_01_0715 - 5542648-5543219,5543352-5543544                           30   3.9  

>12_02_1070 - 25814741-25815850
          Length = 369

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -2

Query: 100 LXPRLXGTAXLPPXXHXXPTSXRXTPPXPPXPP 2
           L P    T  LPP     PT     PP PP PP
Sbjct: 215 LTPPSPSTQQLPPKIRLSPTQAPPPPPPPPPPP 247


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = -1

Query: 170 STPXXXXXXXLPATSXXXXXPXXXXSXPXGDCRASSXPXPXPXLXKKXPPXPXXP 6
           +TP       +PA       P    +   G  RA S P P P      PP P  P
Sbjct: 141 TTPSPPPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPP 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,464,006
Number of Sequences: 37544
Number of extensions: 85018
Number of successful extensions: 957
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4606036876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)