Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L16
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0176 - 1244704-1245102                                           31   1.6  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    29   3.7  
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563...    28   8.6  
01_03_0005 + 11568545-11569119,11569179-11569191                       28   8.6  

>07_01_0176 - 1244704-1245102
          Length = 132

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 351 GGGGGGXFXXXWGGPP 304
           GGGGGG F   W GPP
Sbjct: 42  GGGGGGFFEVPWFGPP 57


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 313 PPXXXKXTPPPPPXXKKXGGG 375
           PP   +  PPPPP  +  GGG
Sbjct: 56  PPPPTQPAPPPPPPARSGGGG 76


>02_04_0654 -
           24755339-24755408,24755488-24755624,24756243-24756326,
           24756929-24756944,24758035-24758405
          Length = 225

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 313 PPXXXKXTPPPPPXXKKXGGG 375
           P    K  PPPPP   K GGG
Sbjct: 56  PARFVKPMPPPPPPFPKGGGG 76


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 375 PPPXFFXXGGGGGGXFXXXWGGPP 304
           PPP +   GGGGGG     +  PP
Sbjct: 71  PPPSYPSGGGGGGGGGTVMYTSPP 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,809
Number of Sequences: 37544
Number of extensions: 381367
Number of successful extensions: 1644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)