Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L14
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.46 
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   2.4  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.6  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    26   7.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.4  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 210 VRVHRADTGRSSNELDRQTTELERR 284
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 272 VGTQGEWGYSTWLVSSERLWRPDV 343
           +G  G+W Y TW  +  R W  DV
Sbjct: 179 LGNTGDWIYDTWSDNELRTWLHDV 202


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 134 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 36
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 279 VPTQSFVDPIHLKICQYPHGGL 214
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +3

Query: 246 NELDRQTTELE---RRGNGATALGWC 314
           N+  R+  +LE    RGNG T L WC
Sbjct: 238 NDCGRRPCQLEFSIERGNGVTHLQWC 263


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 474 WPNDMXTCTFKFGSXMXNXDXXDFXIDKXIYXXXESGXXXVXGSXP 611
           WP D+ T    FG+     D  D   D+ +Y   ++    +  S P
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDTVVNHMGSSDP 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,734
Number of Sequences: 5004
Number of extensions: 47090
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)