Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L14
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.6  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.4  
10_08_1047 - 22549376-22551271                                         29   5.9  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    29   5.9  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   7.8  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   7.8  
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    28   7.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.8  

>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 397 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAVAPFPLRSNSVVCRSNS 248
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 225 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 136
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>10_08_1047 - 22549376-22551271
          Length = 631

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 SAPVYLITAPSPG*SAWTLALQFLCRLDNWP 479
           SA  +L   PSP    + + L  LCR  NWP
Sbjct: 161 SALCFLRDNPSPNYLTYAILLTHLCRSGNWP 191


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 625 SPGPLAXAXXPPXXGPXMXXGXRPPAXRAXXAGPXFPRGGSXXLAPP 765
           S GP A A  PP  GP    G  PP  +        P  G    APP
Sbjct: 108 SQGPFAAAPQPPSQGP---FGTAPPPSQGPFGTAPPPSQGPFGTAPP 151


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 210 VRVHRADTGRSSNELDRQTTELERRG 287
           V+ H  +  R S EL+RQ  ELER+G
Sbjct: 89  VQRHGEELERQSRELERQREELERQG 114


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 97  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 252
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 386 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 246
           E + R W + RLA+   ++  V R   K   P+PP   L+ L++  +
Sbjct: 47  EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 395 GRGERSPRRWLQPRLAVPRQASTSVPRTP 309
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,207
Number of Sequences: 37544
Number of extensions: 441021
Number of successful extensions: 1365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)