Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L07
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0534 + 26071227-26071811                                         29   4.4  
04_04_0343 - 24526223-24527009,24527216-24527340,24527763-245282...    29   5.9  

>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 317 GTLVSGLTWYC*TRLQPPP 373
           GT +SG  W+C TR +P P
Sbjct: 161 GTWISGRAWFCSTRARPDP 179


>04_04_0343 -
           24526223-24527009,24527216-24527340,24527763-24528203,
           24528536-24528637
          Length = 484

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 200 IRESESTVRILADLQMNWIDKRLSWNAGXMGLQHLAGVLGTLV--SGLTWYC*TRLQPPP 373
           ++ + S   ++  + + WI+K L W+ G + L  L  ++G L+  SGL +Y   +L   P
Sbjct: 117 LKSANSLGALIGLVFLVWIEKNLGWDIGFL-LCALIVIVGLLIAASGLPFYGMRKLNGSP 175

Query: 374 GTTL 385
            T +
Sbjct: 176 LTRI 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,910,617
Number of Sequences: 37544
Number of extensions: 348604
Number of successful extensions: 981
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)