Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L07
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.48 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.48 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.84 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.84 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 167 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 280
           ++  L ++H N+ E   TV     L++ W    L+W +
Sbjct: 62  IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 286 NGAAALGWCPRNACVRPDVVLLNAAATTAGDYALRARVSXNGSV 417
           NG  A+  C      +PD++ + A  +  GD     +V  NG++
Sbjct: 17  NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +2

Query: 110 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 289
           S  + +R + +     ++   +TL  +  ++ E    +   A L++ W+D  L WN    
Sbjct: 65  SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123

Query: 290 G 292
           G
Sbjct: 124 G 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +2

Query: 110 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 289
           S  + +R + +     ++   +TL  +  ++ E    +   A L++ W+D  L WN    
Sbjct: 65  SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123

Query: 290 G 292
           G
Sbjct: 124 G 124


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           ++ E    +   A L++ W+D  L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 158 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 292
           K+ VN  L  ++  N+ E    ++    L+  W D +L W+    G
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 IRESESTVRILADLQMNWIDKRLSWNAG 283
           I E + T  +    + +W+D+RL++  G
Sbjct: 44  ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/41 (19%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 RQTTELERRXNGAAALGWCPRNACVRPDVVLLNAAATTAGD 378
           ++T EL  + +  +++   PR++ + P++ +   + +T  D
Sbjct: 272 KKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSD 312


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 416 SPAIKRLDIXXPISMQXXPLAQXXAHLH 499
           SP+   +D+  P   +  P+ Q   HLH
Sbjct: 50  SPSTHLMDLSSPPEHRDLPIYQSHHHLH 77


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 406 NGSVSCHKALGH 441
           NG + CH  LGH
Sbjct: 269 NGDMFCHTGLGH 280


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 56  QVRRNGNQNNISRRHFI 6
           ++ RNG  N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,967
Number of Sequences: 438
Number of extensions: 3508
Number of successful extensions: 23
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)