Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L03
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    62   8e-11
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    61   1e-10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.53 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.9  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   8.6  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   8.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
 Frame = +2

Query: 83  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTM*STCVVLGKT----VLAAR 250
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG      + LGKT    VLAAR
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGI---HIINLGKTWEKLVLAAR 66

Query: 251 AVVTIENPLMCSSSHHGPSVNVLY*NLPAHR-CXPXXGKFQPRGFY*PNPTGFRXPXXLL 427
            + TIENP         P  +       AH       G+F P  F       +R P  ++
Sbjct: 67  VIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLII 126

Query: 428 XWXP 439
              P
Sbjct: 127 VTDP 130


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
 Frame = +2

Query: 71  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTM*STCVVLGKT----V 238
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG      + LGKT    V
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGV---HILNLGKTWEKLV 61

Query: 239 LAARAVVTIENP 274
           LAAR + TIENP
Sbjct: 62  LAARVIATIENP 73



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 202 HVINLRRTG-KNCSGCSCCRNHRKPADVFVISSRXFGQRAVLKFA 333
           H++NL +T  K             PADV V+S+R +G RAVLKFA
Sbjct: 49  HILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFA 93


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXG----GKXXPPPPPPXXXXGG 692
           P P     P  G PP PP   G    G   PPPPPP    GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect = 0.53
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 618 PPXPPGXXGGKXXPPPPPPXXXXGGXXXP 704
           P  PP    G   PPPPPP     G   P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 721 PPPPXXGXXXPPXXFXGGGGGGXXXPPXXP 632
           PP P  G   PP    G  G G   PP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 621 PXPPGXXGGKXXPPPPPPXXXXGGXXXP 704
           P P    GG   PPPPP     G    P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 619 PPXPXGXXGXXXXXPXPPPKXXGGG 693
           PP P G  G     P PPP     G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 661 GGXXXPPXXPGGXGGXPPXGP 599
           GG   PP  PG  G  PP  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 618 PPXPPGXXGGKXXPPPPPP 674
           PP PPG       PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 603 PXGGXPPXPPGXXGGKXXPPPPPP 674
           P    PP PP        PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 673 GGGGGGXXXPPXXPGGXGG 617
           GG GGG   PP  PGG GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -3

Query: 673 GGGGGGXXXPPXXPGGXGGXPPXGPXIFXGXG 578
           GGG GG        GG  G PP GP  F G G
Sbjct: 187 GGGFGGF-------GGGSGGPPPGPGGFGGFG 211



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 673 GGGGGGXXXPPXXPGGXGGXP 611
           GG GGG       PGG GG P
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPPPP-XXXXGGXXXPXXGGGGXP 728
           P P        G PP   G       PPPPPP     G    P  G    P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPPPP 674
           P P        G  P PP    G+  PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQ---GRSAPPPPPP 366



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPPPP 674
           P P     P  G  P P         PP PPP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 342 GAXPXXGS-FNPGXFINQIQXXSGNPXFYXFGXR 440
           GA    G  FNP    + I   SGNP  Y +G R
Sbjct: 317 GAQQGEGEPFNPANMFSNIFNLSGNPGDYAWGAR 350


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 DQLASYWEKLFWLLVLS*PSKTR*CVRHL 293
           D++ S W+KL  + VL  P   R  +RH+
Sbjct: 174 DRILSLWQKLIEMPVLQRPDWLRSSIRHI 202


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 579 PXPXKXXGPXGGXPPXPPGXXGGKXXPPPP 668
           P P     P    PP P     G+  PPPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 163 DGDLCLQTTC*WYHVINLRRTGKNCSGCSCCRNH 264
           +GDLC + +   Y  +N+ + GK  S  S  R H
Sbjct: 83  EGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRKH 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,173
Number of Sequences: 5004
Number of extensions: 51952
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)