Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_L03
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.57 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 263 WLRQHEQPEQFFPVRRKLITWYHQHVVCRH 174
           WL Q E+ +++  ++RK+I  Y  ++   H
Sbjct: 43  WLVQQEREQEYEKLKRKMILEYELYIKYSH 72


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 RTGKNCSGCSCCRNHRKPADVFVISSRXFGQRAV 321
           RTG NCS  S   +  +  + FV  S+ F +R++
Sbjct: 13  RTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSI 46


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 645  GKXXPPPPPP 674
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 648 KXXPPPPPP 674
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 657  PPPPPPXXXXG 689
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -3

Query: 271 VFDGYDSTSSQNSF 230
           +F+G+D+T+S +SF
Sbjct: 346 MFEGHDTTASGSSF 359


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 150 MLTSRWRPMSTNDVLMVPCDQLASYWEKLFWLLVLS 257
           ++  R R  +    ++ PC     YW+    LL+++
Sbjct: 66  LMKERIRQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 150 MLTSRWRPMSTNDVLMVPCDQLASYWEKLFWLLVLS 257
           ++  R R  +    ++ PC     YW+    LL+++
Sbjct: 66  LMKERIRQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 11  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF 160
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNY 275


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 150 MLTSRWRPMSTNDVLMVPCDQLASYWEKLFWLLVLS 257
           ++  R R  +    ++ PC     YW+    LL+++
Sbjct: 66  LMKERIRQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,216
Number of Sequences: 438
Number of extensions: 6613
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)