Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_K13
(829 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.85
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.5
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 4.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 6.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 32.7 bits (71), Expect = 0.004
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 94 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 258
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 259 MNWIGKRLSWNA 294
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.0 bits (52), Expect = 0.85
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVL 361
G T V SE +W PD+VL
Sbjct: 91 GVDTLHVPSEHIWLPDIVL 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 323 VSSERLWRPDVVL 361
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 323 VSSERLWRPDVVL 361
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 323 VSSERLWRPDVVL 361
V S+ +WRPD+VL
Sbjct: 101 VPSDHIWRPDIVL 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 299 EWGCSTWL-VSSERLWRPDVVL 361
E+G T L V SE +W PD+VL
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVL 109
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
+ RLW+PDV++ G Y V N G+ L
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCL 137
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 305 GCSTWLVSSERLWRPDVVL 361
G V SE +W PD+VL
Sbjct: 104 GVEMLYVPSENIWLPDIVL 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIGKRLS 285
+++ LL++Y+ P + V + L+ ++ E + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 286 WNAGRMG 306
WN G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIGKRLS 285
+++ LL++Y+ P + V + L+ ++ E + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 286 WNAGRMG 306
WN G
Sbjct: 118 WNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 VSSERLWRPDVVLL-XXXXXXXGDYALRARVSNXGSXL 433
++ +LW+PD+++ G Y V++ GS L
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCL 100
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 211 NIRESESTVRILADLQMNWIGKRLSWNAGRMG 306
++ E + A L++ W+ L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 4.6
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHANIRESESTVRILADLQMNWI 270
N ++S ++DS +YD+ P+ + V +T++ + S +L D +++
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMY-----VLSISSVSEVLMDFTLDFY 62
Query: 271 GKRLSWNAGRMGLQHLAGV 327
++ W R+ + GV
Sbjct: 63 FRQF-WTDPRLAFKKRTGV 80
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.0
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 100 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 267
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 268 IGKRLSWNAGRMGLQHLA 321
RL++ R G++ L+
Sbjct: 68 TDPRLAFKK-RTGVETLS 84
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,717
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 35
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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