Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_K09
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 241 1e-64
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 238 8e-64
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 3e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 27 4.1
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 9.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 9.4
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.4
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 9.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 241 bits (589), Expect = 1e-64
Identities = 113/172 (65%), Positives = 135/172 (78%)
Frame = +2
Query: 83 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 262
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 263 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 442
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 443 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 598
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LL
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 600 AREVLRLRGVLPRDQRWDVVVDLSFYRDPEESEKDEQQ 713
AREVLRLRG + R W+V+ DL FYRDPEE E++E+Q
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 238 bits (582), Expect = 8e-64
Identities = 115/197 (58%), Positives = 143/197 (72%), Gaps = 8/197 (4%)
Frame = +2
Query: 71 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 250
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 251 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 430
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 431 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL---- 598
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LL
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 599 ----GT*SAEASWCASP 637
GT S A W P
Sbjct: 185 LRVRGTLSRSAPWDVMP 201
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = +3
Query: 600 AREVLRLRGVLPRDQRWDVVVDLSFYRDPEESEKDEQQAKEQAVVPAK 743
AREVLR+RG L R WDV+ DL FYRDPEE E+ E++AK+ A A+
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVER-EEEAKKAAAAAAE 227
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.0 bits (99), Expect = 3e-05
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 27/188 (14%)
Frame = +2
Query: 116 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 289
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 290 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 406
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 407 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 574
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 575 IGLMWWLL 598
L+ LL
Sbjct: 232 TDLIAGLL 239
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 206 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 382
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 341 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 505
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 506 CNTDSPLRFVDIAIPCNTKSSHSI 577
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 469 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 290
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 289 EHISGVLDG 263
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 591 GCWAREVLRLRGVLPRDQRW 650
G W+ +L+ GVL RD RW
Sbjct: 25 GSWSSILLKAVGVLSRDSRW 44
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 648 WDVVVDLSFYRDPEESEKDEQQAKEQAVVPAKPXSSCSWSM 770
W++++ Y++ E K Q ++PA P + S S+
Sbjct: 65 WNILLKKGSYKENELLAKRNQNLVPTVIIPASPRDNASKSV 105
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.4
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 290 RTHQRGSRWLRQHEQPEQVFPRYDA 216
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 631 FPVTSAGML--WLICPSTVTLKKVKRM 705
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 609 VLRLRGVLPRDQRWDVVVDLSFYRDPEESEKDEQQAKEQAVV 734
VL +LP++ W +V D+S ++P+ + ++ A+V
Sbjct: 1069 VLNTLELLPKEDTWILVTDMSVDKEPDPNFLPQKLLTLDAIV 1110
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 648 WDVVVDLSFYRDPEESEKDEQQAKEQAVVPAK 743
W++ D S D E SEK Q+ ++ PA+
Sbjct: 727 WEIQQDFSIENDTELSEKVGQRTVLDSIAPAE 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,241
Number of Sequences: 5004
Number of extensions: 75442
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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