Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_K08
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.92
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 199 PPXXXTPPPPXXXKGGXXPPXGPKXXXXPPXPPXFXKKXXN 321
PP PPPP G PP P PP PP + KK N
Sbjct: 5 PPGNPPPPPPPP---GFEPPSQPP----PPPPPGYVKKRKN 38
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 455 PXAXPXPPPPPXEXKKXXCXXPPP 384
P P PPPPP + PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.92
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -1
Query: 462 PPXXXXPXPPPPPRXTXKKXXFXPPPXFXXXXPPXXSP 349
PP P PPPPP P P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 181 PQNPXGPPXXXTPPPPXXXKGGXXPPXGPKXXXXPPXPP 297
PQ+ PP P PP PP P PP P
Sbjct: 1694 PQSA-APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -2
Query: 461 PXPXAXPXPPPPPXEXKKXXCXXPPPXLXXXPPXXXPP 348
P P P PPP P PP PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Frame = +1
Query: 190 PXGPPXXXTPPPPXXXKGGXXPPXGPK--XXXXPPXPP 297
P P PPP GG PP P PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Frame = -2
Query: 443 PXPPPP----PXEXKKXXCXXPP-PXLXXXPPXXXPPG-GGXGXP 327
P PPPP P PP P + PP PPG G G P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +1
Query: 184 QNPXGPPXXXTPPPPXXXKGGXXPPXGPKXXXXPPXPPXFXKKXXNFXGXPXPPP 348
++P PP P P PP P PP PP P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAP-IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 221 PPPXGXRGXXPPPXAP 268
PPP G G PPP P
Sbjct: 765 PPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 169 IGKXPQNPXGPPXXXTPPPPXXXKGGXXPPXGPKXXXXPPXPP 297
IG N PP PPPP P P+ PP PP
Sbjct: 327 IGNGSSNSSLPP----PPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = +1
Query: 217 PPPPXXXKGGXXPPXGPKXXXXPPXPPXFXKKXXNFXGXPXPPPG 351
PPPP + PP G PP + P PP G
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 GKXPQNPXGPPXXXTPPPPXXXKGGXXPP--XGPKXXXXPPXPP 297
G P P G PPP G PP + PP PP
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +1
Query: 172 GKXPQNPXGPPXXXTPPPPXXXKGGXXPPXGPKXXXXPPXPPXFXKKXXNFXGXPXPPP 348
G N PP PPPP P P P PP G P P P
Sbjct: 1873 GSDLSNQAAPP----PPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = -2
Query: 455 PXAXPXPPPPPXEXKKXXCXXPPPXLXXXPPXXXPP 348
P + P PP P E + P P + P PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,971
Number of Sequences: 5004
Number of extensions: 32164
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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