Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_J24
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.62 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.62 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.62 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.62 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.62 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.62 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 14/87 (16%), Positives = 37/87 (42%)
 Frame = +1

Query: 490 PAPFRRLARPASITVDIFLVVYQLGICCVYIVFIADNIKKIVDPFYAMAVELHMLIILXP 669
           PAP +      +I   + L++  +G CCV  +F      +     + +++ +  +I+   
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE 109

Query: 670 LIVFNLIPXLKLXAPFSAGANVLTFIG 750
           + +  +   ++    +  G +V +  G
Sbjct: 110 MPMLVISSFMERMIGWEIGCDVYSVFG 136


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 268 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 414
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 268 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 414
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 268 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 414
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 268 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 414
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 14/87 (16%), Positives = 37/87 (42%)
 Frame = +1

Query: 490 PAPFRRLARPASITVDIFLVVYQLGICCVYIVFIADNIKKIVDPFYAMAVELHMLIILXP 669
           PAP +      +I   + L++  +G CCV  +F      +     + +++ +  +I+   
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE 109

Query: 670 LIVFNLIPXLKLXAPFSAGANVLTFIG 750
           + +  +   ++    +  G +V +  G
Sbjct: 110 MPMLVISSFMERMIGWEIGCDVYSVFG 136


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 697 LKLXAPFSAGANVLTFIGLGIVVYYLANGXKSTSR 801
           L +   FSAG+ ++    +G +VY +  G    SR
Sbjct: 117 LHVSCSFSAGSTIIREGDVGSIVYVMEEGKVEVSR 151


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 228 MFVRVVALFGCRVLCFTVDIVRDSTKVHRLRLVL 127
           +FV +  L   +V+CF    +  ++ ++RL+L L
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRLKLYL 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,142
Number of Sequences: 438
Number of extensions: 3679
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)