Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_J22
         (1040 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030973-1|AAH30973.1|  392|Homo sapiens UBE4A protein protein.        34   0.74 
BC048271-1|AAH48271.1|  611|Homo sapiens ZC3H11A protein protein.      31   9.1  

>BC030973-1|AAH30973.1|  392|Homo sapiens UBE4A protein protein.
          Length = 392

 Score = 34.3 bits (75), Expect = 0.74
 Identities = 22/54 (40%), Positives = 22/54 (40%)
 Frame = +3

Query: 378 GVXXXXXXXXKTPPPXXKKKXKKXKXXGGGXXXXXKKKKKKXXXXXXXXKKKKK 539
           GV        KTP    KKK KK K          KKKKKK        KKKKK
Sbjct: 331 GVILSISCLLKTPGVVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 384


>BC048271-1|AAH48271.1|  611|Homo sapiens ZC3H11A protein protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 18/41 (43%), Positives = 18/41 (43%)
 Frame = +2

Query: 416 PPXXKKKXKKKXTXXGGXXXXPKKKKKKXXXXXXXXKKKKK 538
           P   KKK KKK           KKKKKK        KKKKK
Sbjct: 571 PGNGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 611


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,418,680
Number of Sequences: 237096
Number of extensions: 1517872
Number of successful extensions: 39379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14315
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14097248130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)