Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_J19
(843 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.29
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.38
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.87
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.5
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 2.0
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 2.0
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 2.0
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.16
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 178 PPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 315
P + ++ L ++H N+ E TV L++ W L+W +
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +1
Query: 145 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 324
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 325 G 327
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +1
Query: 145 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 324
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 325 G 327
G
Sbjct: 124 G 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.0 bits (52), Expect = 0.87
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 326 GCSTWLVSSERLWRPDVVL 382
G T V SE +W PD+VL
Sbjct: 91 GVDTLHVPSEHIWLPDIVL 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 344 VSSERLWRPDVVL 382
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 344 VSSERLWRPDVVL 382
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 344 VSSERLWRPDVVL 382
V S+ +WRPD+VL
Sbjct: 101 VPSDHIWRPDIVL 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 320 EWGCSTWL-VSSERLWRPDVVL 382
E+G T L V SE +W PD+VL
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVL 109
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 199 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN 312
+V + L +R A I + + +Q + W+D+RL +N
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 235 IRESESTVRIQADLQMNWIDKRLSWNAG 318
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 193 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 326 GCSTWLVSSERLWRPDVVL 382
G V SE +W PD+VL
Sbjct: 104 GVEMLYVPSENIWLPDIVL 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +1
Query: 160 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
+R +G + LTL ++ ++ E + L++ W D + WN G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,134
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 35
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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