Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_J13
(800 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 42 5e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 8e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 6e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.088
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 44.0 bits (99), Expect = 2e-06
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 150 LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW- 320
L YDR+ P+ K ++ L ++H N+ E TV L++ W L+W + E+
Sbjct: 44 LFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFD 103
Query: 321 GCSTWLVSSERLWRPDVVL 377
++ V S +W PD+V+
Sbjct: 104 SINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 42.3 bits (95), Expect = 5e-06
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +3
Query: 150 LLATYDRESPPDSK----IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWN 308
LL+ Y+R P S +VV L L L N+++ T + L+ W D + W+
Sbjct: 28 LLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWD 85
Query: 309 AGEWGCSTWL-VSSERLWRPDVVLLN 383
E+G T L V SE +W PD+VL N
Sbjct: 86 PAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 40.3 bits (90), Expect = 2e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +3
Query: 150 LLATYDRESPP----DSKIVVNLTLHLRH---ANIRESESTVRILADLQMNWIDKRLSWN 308
LL+ Y+R P ++ V + L L N++ T + ++ W D +L WN
Sbjct: 28 LLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWN 85
Query: 309 AGEWG-CSTWLVSSERLWRPDVVLLN 383
++G T V SE +W PD+VL N
Sbjct: 86 PDDYGGVDTLHVPSEHIWLPDIVLYN 111
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 383
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.5 bits (88), Expect = 4e-05
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 270 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 383
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 150 LLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLSWNAG 314
LL+ Y+R P LT L L+ + + E +++ ++ W D +L WN
Sbjct: 41 LLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLKWNPE 100
Query: 315 EWGCSTWL-VSSERLWRPDVVLLN 383
E+G L V SE +W PD+VL N
Sbjct: 101 EYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 189 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 362
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 363 PDVVLLN 383
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 189 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 362
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 363 PDVVLLN 383
PD+VL N
Sbjct: 113 PDIVLYN 119
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.3 bits (85), Expect = 8e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 192 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 368
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 369 VVLLN 383
+L N
Sbjct: 92 TILYN 96
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.5 bits (83), Expect = 1e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 189 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 362
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 363 PDVVLLN 383
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.5 bits (78), Expect = 6e-04
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 270 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 383
L++ W D + WN ++G L + RLW+PDV++ N
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYN 114
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 150 LLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWNAGE 317
LL YD PD V + + +R I E + T + + +W+D+RL++ G+
Sbjct: 13 LLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
Query: 318 WGCSTWLVSSERLWRPDVVLLN 383
+ + R+W+PD N
Sbjct: 73 ETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.088
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 273 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 383
+ +W D RLS+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 335 PSAAAPFPCVPTQS 294
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,824
Number of Sequences: 438
Number of extensions: 4272
Number of successful extensions: 54
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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