Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_J09
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.58
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 28 1.3
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 28 1.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 4.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.2
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 7.2
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 9.5
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.5 bits (63), Expect = 0.58
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWATA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATP--SSSRITIGGLAL------MHQATLPWRSRATSTRSSNPRFHTPNH 603
DV+ E L+TP S +G + Q T +S STR+S+ ++ N
Sbjct: 367 DVSDEEQRFLSTPLGSFDESILGSSPINRLSSSFKQYTSSLKSPGLSTRTSS-TMNSLNS 425
Query: 604 PRLNIHFHQS 633
R +F +S
Sbjct: 426 SRFGAYFSKS 435
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 571 SSNPRFHTPNHPRLNIHFHQSPERRTKKEFAPGVKASGG 687
SS+PRF PN+ + N + R ++ + P + S G
Sbjct: 196 SSSPRFKGPNYNKFNAKLYLESLREKRRTYTPLSEISNG 234
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVAQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/107 (22%), Positives = 40/107 (37%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWATADVT 456
T T S +T + +S+ Y + + + S P PVT C + V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNPRFHTP 597
V +TP ++ ++ + +T P S + SS P TP
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTP 585
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = +1
Query: 289 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWATADVTVE 462
T +N T S+P S+ + +V + S P P+T C + +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 463 GVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNPRFHTP 597
V +TP ++ ++ + +T P S + SS P TP
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTP 526
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLAISGYINPIIKSPIPYTKP---PQT*HPFPSIP 635
HPF+ ++ P+A+ P L + PI+ SP+ Y P T PF P
Sbjct: 233 HPFMQES---KTSPFATRRPSLNTDHHGRPILLSPLNYQNSSLNPSTPSPFGGSP 284
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 508 GGLALMHQATLPWRSRATSTRSSNPRFHTPNHPRLNIHFHQSPERRTKKEFA 663
G + +H AT P+R + S RSS+ P + H S + FA
Sbjct: 340 GHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFA 391
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 569 RVDVARDRQGRVA*CIRARPPIVMREDE 486
RVD R +A IR R P+ ++EDE
Sbjct: 472 RVDALRSSANSIASSIRRRHPVNIQEDE 499
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 469 NVLATPSS-SRITIGGLALMHQATLPWRSRATSTRSSNPRFHTPNHPRLNI 618
N+L P+ S + G + T W+ RAT + RF N P NI
Sbjct: 568 NILEQPNGPSGLLSAGFSQGKTNTNDWQDRATEWQLELERFILENEPMRNI 618
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 575 QIPDSIHQTTPDLTSISINPLNAVLKRSSRRGLK 676
Q+P S++ P IS LN + SR G+K
Sbjct: 27 QLPTSVNIEDPSKLCISSEKLNTPMHNRSRSGIK 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,804
Number of Sequences: 5004
Number of extensions: 64209
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -