Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_J06
         (1039 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +3

Query: 810 PPPPPPXXXXXXXXXXXXXXXXXXXXXXXXPPPPXXXXXXXXXXXPPPPXXP 965
           PPPPPP                        PPPP           PPPP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +3

Query: 684  PPPPPPXKKKXXFXXXXXPXXXXXXXXXXXXXXAPXFFFXXXPPPPPP 827
            PPPPPP   K        P                  F    PPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAF-PPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 900 PPPPXXXXXXXXXXXPPPPXXPXKKKK 980
           PPPP           PPPP    KK+K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 900 PPPPXXXXXXXXXXXPPPPXXPXKKKK 980
           PPPP           PPPP  P   KK
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,438
Number of Sequences: 5004
Number of extensions: 28380
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)