Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_J04
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.16 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 524 GGXXXPPPPPXXXGXKKXPPPPXKXFIXGGG 432
           GG   PPPPP   G    PPPP    +  GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 526 GGXXXPPPPPXXXXXKKXPPPPPXNXLXGGG 434
           GG   PPPPP        PPPPP   +  GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 511 PPPPPXXXXXKKXPPPPPXNXLXGG 437
           P PPP        PPPPP      G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAG 774


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 526 GGXXXPPPPPXXXXXKKXPPPPP 458
           G    PPPPP      + PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.5 bits (63), Expect = 0.64
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 524 GGXXXPPPPPXXXGXKKXPPPPXKXFI 444
           G    PPPPP      + PPPP   ++
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYV 33


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 521 GXXXPPPPPXXXGXKKXPPPPXK 453
           G   PPPP      +  PPPP K
Sbjct: 321 GEHMPPPPMHHEPGEHMPPPPFK 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,413
Number of Sequences: 5004
Number of extensions: 26232
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)