Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_I24
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   4.7  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 468 GGXXXPPXPXXXGGXGXXPPPPPPP 542
           GG   PP P    G G  PPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 486 PXPXXXGGXGXXPPPPPPP 542
           P P      G  PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 472 GXXXPPPXXXGGGXXXXPPPPPP 540
           G   PPP   G      PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 471 GXXXPPXPXXXGGXGXXPPPPPPP 542
           G   PP P         PPPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 468 GGXXXPPXPXXXGGXGXXPPPPPP 539
           G    PP P         PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 487 PPXXXGGGXXXXPPPPPP 540
           PP   G      PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 522 PPPPPPP 542
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.0 bits (47), Expect(2) = 3.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 483 PPXPXXXGGXGXXPPPPPP 539
           PP           PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 513 GXXPPPPPPP 542
           G   PPPPPP
Sbjct: 357 GRSAPPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 4.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 483 PPXPXXXGGXGXXPPPPPP 539
           PP P    G    PP  PP
Sbjct: 254 PPIPPPSNGTVSSPPNSPP 272


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
 Frame = -1

Query: 538 GGGGGGXXPXPPXXXGXGGXXXPPXKKKKKXXFFFFXXXPXFF------FXXXXXGGGGG 377
           GG GGG    PP   G GG      +         F   P  F      F     G GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250

Query: 376 XKXFLXGGGPXXPXXGGG 323
              F  GGGP     GGG
Sbjct: 251 LGGF--GGGPG--GFGGG 264


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 327  PPXXGXXGPPPXKKXFXPPPPP 392
            PP       PP      PPPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP 1711



 Score = 21.0 bits (42), Expect(2) = 4.7
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 483  PPXPXXXGGXGXXPPPPPPP 542
            PP P         P  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 486 PXPXXXGGXGXXPPPPPPP 542
           P        G  PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.151    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,888
Number of Sequences: 5004
Number of extensions: 20877
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)