Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_I20
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   10.0 

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 662 SQAQPGSSFPADSPKPVP 609
           S+A+PG++ P   P+P P
Sbjct: 94  SEAEPGNNRPVYIPQPRP 111


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +1

Query: 211 HELDQVQSDDVRHGG-RRWLSLAQ*SSGKGVDQA---RLFLPRSSLPWLPLYLTSETDIK 378
           HE D +   D R GG RR + L +  S    + A     FL   S     +Y   +  + 
Sbjct: 54  HESDDLHESDGRVGGKRRNILLRRTDSMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLL 113

Query: 379 HLLIQFRRRTATIGRVGISG 438
            ++  ++R  + +GR   SG
Sbjct: 114 GIVDDYQRNPSVVGRKKSSG 133


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 184 SDTGVERFTHELDQVQSDDVRH 249
           S  G E  T +   ++ DD RH
Sbjct: 405 SPDGFESVTSQYKNIREDDARH 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,382
Number of Sequences: 438
Number of extensions: 6086
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)