Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_I08
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   101   1e-22
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    42   8e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    40   6e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.027
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    33   0.048
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    31   0.19 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    31   0.26 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.34 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.59 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.78 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   1.8  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    27   2.4  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.2  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  101 bits (242), Expect = 1e-22
 Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 438 GLLSFWRGNFANVIRYFSTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 617
           G++S WRGN ANV+RYF TQALNFAFKDK+K++F G   ++  + ++F            
Sbjct: 86  GVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGA 144

Query: 618 TSLCFVYPLDFARTRLAADV--GKGDGXREFSGLGNXIXXIFXSDGLIGLXXG 770
            SL FVY LD+ARTRLA D    K  G R+F+GL +     + SDGL GL  G
Sbjct: 145 ASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRG 197



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
 Frame = +2

Query: 263 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAA---DQRYKGIVDAFVRIPKE 433
           F  DF+ GG+SAAVSKTA APIERVKLL+Q Q   E I A     RYKGI + F R   E
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQ--DEMIRAGRLSHRYKGIGECFKRTAAE 84

Query: 434 QG 439
           +G
Sbjct: 85  EG 86



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAADQRYKGIVDAFVRIPKEQG 439
           FA +  +GG + A S   V  ++  +  L     S +   ++++ G+VD + +  +  G
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDG 190


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 17/31 (54%), Positives = 27/31 (87%)
 Frame = +2

Query: 278 LAGGISAAVSKTAVAPIERVKLLLQVQHVSE 370
           L+GG++A VS+TAV+P+ER+K++ QVQ+  E
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQNNKE 55



 Score = 33.9 bits (74), Expect = 0.027
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 438 GLLSFWRGNFANVIRYFSTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 617
           GL+ F+RGN  N +R F   A+ FA  +  KQ  L    K                    
Sbjct: 71  GLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQRAL----KNRSHQNLENHERLLFGAIAG 126

Query: 618 TSLC-FVYPLDFARTRLAAD 674
            + C   YPLD ARTRL+ +
Sbjct: 127 AASCATTYPLDIARTRLSIE 146


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = +2

Query: 269 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAADQRYKGIVDAFVRI 424
           K  +AGG +  V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHI 69



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +3

Query: 438 GLLSFWRGNFANVIRYFSTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 617
           GL   ++G+ A + R F    + F   ++ ++V +   + +T   R+             
Sbjct: 74  GLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRFLSGSLAGTC---- 129

Query: 618 TSLCFVYPLDFARTRLA 668
            S+ F YPL+  R RLA
Sbjct: 130 -SVFFTYPLELIRVRLA 145


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 251 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 349
           DP      F++GGI+  VS+T  AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 275 FLAGGISAAVSKTAVAPIERVKLLLQVQHVS 367
           +LAGG++ +V++  + P++ +K  +Q   +S
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLS 262


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 275 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAADQR-YKGIVDAFVRIPKEQG 439
           FL+GG++A  + T   P E +K   Q+Q    ++   +R YK +  AF  I + +G
Sbjct: 27  FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEG 82


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 278 LAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAADQRYKGIVDAFVRIPKEQGSP 445
           ++GG+S A++ +   P++ VK LLQ +  S  I   ++ KG +D    I    G P
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIP 263


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 358
           PV   + +++G IS   +   V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 260 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSEQIAADQRYKGIVDAFVRIPKEQ 436
           +F KDFLA G+S  V++  V  P + VK+ LQ Q     I     Y   +D   +I K +
Sbjct: 16  SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69

Query: 437 G 439
           G
Sbjct: 70  G 70


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 212 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 352
           V +T +N  SN   P   +  F+AGG++  +   A AP++ VK  LQ
Sbjct: 32  VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 711 DRRIHXXHLPYQHRRRDGYVRSRGGTRSTERWL-RRHHRRPD--YQRSNARTASSCQHRR 541
           D RIH        R R  Y  +R   RS+ R   R +HRR D  Y RSN R     +HRR
Sbjct: 312 DSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRSNYR--DDYRHRR 369


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 278 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 367
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 358
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 633 VYPLDFARTRLAADVGKGDGXREFSGLGNXIXXIFXSDGLIGLXXGSXCP 782
           +YPLD  +TR+   VGK D    ++G  + +  I  ++G   L  G   P
Sbjct: 26  LYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRGILPP 71



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 266 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSEQIAADQRYKGIVDAFVRIPKEQ 436
           A   L G  +       V P E +K+ LQ       +    +Y G VD F +I K++
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQ------DVKNASKYNGTVDCFTKIVKQE 155


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 699 HXXHLPYQHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 541
           H    P + R RD   RS   +RS     R  HR  DY RS   ++   + RR
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,593
Number of Sequences: 5004
Number of extensions: 42088
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)