SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H24
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...   108   8e-25
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...   108   8e-25
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...   108   8e-25
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...   108   8e-25
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...   108   8e-25
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...   108   8e-25
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...   108   8e-25
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...   108   8e-25
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...   108   8e-25
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...   108   8e-25
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...   108   8e-25
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.3  

>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
            element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
            element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
            element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
            element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score =  108 bits (260), Expect = 8e-25
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 16   VVEFPTPSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLL 195
            V+++  P N K+++ FLG V+Y R+FIP  S++  PL +LLKK+  + W   Q  + + +
Sbjct: 630  VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 196  KQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQ-GPVGKDRPIAFASRTLNRSEVHY 372
            KQ L + PVL + DFS+  LL  DAS+ AVG+VLSQ     K  P+ + S  +++++++Y
Sbjct: 690  KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 373  STTEKELLAILFGCKTFR 426
            S ++KE+LAI+   K +R
Sbjct: 750  SVSDKEMLAIIKSLKHWR 767



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 FQIITDHRPLKW-LFNHKDPSSK-MQRWRLKLEEFDYEIIYRKG 574
           F+I+TDHR L   + N  +P +K + RW+L L++F++EI YR G
Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 232 PDFSQPFLLTCDASNHAVGSVLSQGPVGKDRPIAFAS 342
           P  S+ F + CD  +H +G +L +    KD P A++S
Sbjct: 198 PVGSKYFFVPCDKKHHTLGLLLWKLFFLKDMPAAYSS 234


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 209 VSFCFRRSNDICCWFSQLNGVSFFSKEVRGLAIFEKS 99
           + FCF  S  +  WF+ L G+SFFS  +     + +S
Sbjct: 1   MKFCFFVS--LSFWFAVLFGISFFSSTLSNPLTYSRS 35


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 35  LLIPKTLNPFLVSFPTIAG 91
           L +PK + PFL++ P I G
Sbjct: 111 LEVPKRIKPFLIALPVILG 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,898
Number of Sequences: 5004
Number of extensions: 71659
Number of successful extensions: 231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -