Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H12
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.2  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.7  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   9.7  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 405  FEQLHGNRKTMDMKGENYEAILEKSPGFNNPNCIQFLSEHLGIANMHCTNFSYLRGRFAP 584
            F  +H  R T+  + E+Y   LE     N  NCI F  ++L   +    + SY R +   
Sbjct: 941  FMLIHDRRLTIVPQFEDYVQELESLRRLNYKNCISFWKKYL--KDFKFKSLSYQREKMGV 998

Query: 585  SEYADEL 605
             E +  +
Sbjct: 999  VELSSNI 1005


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 441 MKGENYEAILEKSPGFNNPNCIQFLSEHLGIANMHCTNFS 560
           M  E Y AI+  + G N    I+ LSE      +HC + S
Sbjct: 1   MAEEGYVAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRS 40


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 417 HGNRKTMDMKGENYEAILEKSPGFNNPNCIQFL 515
           HG  K     G N   ILEK+P F   + +  L
Sbjct: 64  HGGDKVAKWCGSNLPQILEKNPDFQKGDFVNAL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,680
Number of Sequences: 5004
Number of extensions: 67459
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)