Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_H10
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 279 3e-76
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 278 8e-76
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 48 2e-06
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 25 9.6
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.6
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 9.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 279 bits (684), Expect = 3e-76
Identities = 133/206 (64%), Positives = 158/206 (76%)
Frame = +2
Query: 95 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 274
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 275 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFCEPRLLIVLD 454
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I + EPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 455 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLR 634
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVL LR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 635 GVLPRDQRWDVVVDLSFYRDPEXSER 712
G + R W+V+ DL FYRDPE ER
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIER 215
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 278 bits (681), Expect = 8e-76
Identities = 130/210 (61%), Positives = 160/210 (76%)
Frame = +2
Query: 83 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 262
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 263 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFCEPRLL 442
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I + EPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 443 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 622
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 623 LXLRGVLPRDQRWDVVVDLSFYRDPEXSER 712
L +RG L R WDV+ DL FYRDPE ER
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVER 214
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 47.6 bits (108), Expect = 2e-06
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Frame = +2
Query: 128 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 301
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 302 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQ-----AAFCE--------- 430
+ GQ+ +V+ A I R+ PG TN ++Q + C+
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 431 --------PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 586
P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 587 IGLMWWLLAR 616
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 218 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 394
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 479 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 589
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 481 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 302
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 301 EHISGVLDG 275
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 572 WCCMG*QCPQILAG 531
WCC G C ++LAG
Sbjct: 55 WCCNGKGCKKVLAG 68
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.6
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 302 RTHQRGSRWLRQHEQPEQVFPRYDA 228
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 432 GSQNAAWIWLVKAPGVKRPAIGVAPVCAA 346
G+ +A W WL+ G A+ VA + +A
Sbjct: 92 GAPSAVWCWLIAGAGCMCIALSVAELVSA 120
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 453 TLHKTINPLLKLHMSTFL*LLCATQTPR-*DLWTLLSHATPSLPTLLV 593
+L+K + PLL + F LL + +TP+ DL+T L P +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,684
Number of Sequences: 5004
Number of extensions: 72834
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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